## R version 3.2.5 (2016-04-14)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 14.04.4 LTS
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8
## [4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C LC_ADDRESS=C
## [10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats4 parallel stats graphics utils datasets grDevices methods base
##
## other attached packages:
## [1] ape_3.4 ggplot2_2.0.0 systemPipeR_1.4.8
## [4] RSQLite_1.0.0 DBI_0.3.1 ShortRead_1.28.0
## [7] GenomicAlignments_1.6.1 SummarizedExperiment_1.0.1 Biobase_2.30.0
## [10] BiocParallel_1.4.0 Rsamtools_1.22.0 Biostrings_2.38.2
## [13] XVector_0.10.0 GenomicRanges_1.22.1 GenomeInfoDb_1.6.1
## [16] IRanges_2.4.4 S4Vectors_0.8.3 BiocGenerics_0.16.1
## [19] BiocStyle_1.8.0
##
## loaded via a namespace (and not attached):
## [1] Rcpp_0.12.3 lattice_0.20-33 GO.db_3.2.2 digest_0.6.9
## [5] plyr_1.8.3 futile.options_1.0.0 BatchJobs_1.6 evaluate_0.8
## [9] zlibbioc_1.16.0 GenomicFeatures_1.22.6 annotate_1.48.0 Matrix_1.2-3
## [13] checkmate_1.6.3 rmarkdown_0.9.2 GOstats_2.36.0 splines_3.2.5
## [17] stringr_1.0.0 pheatmap_1.0.7 RCurl_1.95-4.7 biomaRt_2.26.1
## [21] munsell_0.4.2 sendmailR_1.2-1 rtracklayer_1.30.1 base64enc_0.1-3
## [25] BBmisc_1.9 htmltools_0.3 fail_1.3 edgeR_3.12.0
## [29] codetools_0.2-14 XML_3.98-1.3 AnnotationForge_1.12.0 bitops_1.0-6
## [33] grid_3.2.5 RBGL_1.46.0 nlme_3.1-122 xtable_1.8-0
## [37] GSEABase_1.32.0 gtable_0.1.2 magrittr_1.5 formatR_1.2.1
## [41] scales_0.3.0 graph_1.48.0 stringi_1.0-1 hwriter_1.3.2
## [45] genefilter_1.52.0 limma_3.26.3 latticeExtra_0.6-26 futile.logger_1.4.1
## [49] brew_1.0-6 rjson_0.2.15 lambda.r_1.1.7 RColorBrewer_1.1-2
## [53] tools_3.2.5 Category_2.36.0 survival_2.38-3 yaml_2.1.13
## [57] AnnotationDbi_1.32.0 colorspace_1.2-6 knitr_1.12