1. Girke, Thomas (2014) systemPipeR: NGS workflow and report generation environment. NA, NA: NA; URL
  2. Howard, Brian E, Hu, Qiwen, Babaoglu, Ahmet Can, Chandra, Manan, Borghi, Monica, Tan, Xiaoping, He, Luyan, Winter-Sederoff, Heike, Gassmann, Walter, Veronese, Paola, Heber, Steffen (2013) High-throughput RNA sequencing of pseudomonas-infected Arabidopsis reveals hidden transcriptome complexity and novel splice variants. PLoS One, 8: e74183; URL
  3. Kim, Daehwan, Pertea, Geo, Trapnell, Cole, Pimentel, Harold, Kelley, Ryan, Salzberg, Steven L (2013) TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol., 14: R36; URL
  4. Langmead, Ben, Salzberg, Steven L (2012) Fast gapped-read alignment with Bowtie 2. Nat. Methods, 9: 357–359; URL
  5. Lawrence, Michael, Huber, Wolfgang, Pag`{e}s, Herv'{e}, Aboyoun, Patrick, Carlson, Marc, Gentleman, Robert, Morgan, Martin T, Carey, Vincent J (2013) Software for computing and annotating genomic ranges. PLoS Comput. Biol., 9: e1003118; URL
  6. Robinson, M D, McCarthy, D J, Smyth, G K (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, 26: 139–140; URL
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